Thursday 17 January 2013

A happy ending for orphan genes


This New Year as the weather turns chilly, spare a thought for the orphan genes. Around a third of all genes in all genomes have no relatives – no parents, no family tree, no evolutionary past. They’ve had a tough time of it and they’re struggling for recognition.

Orphan genes are genes found in just one species (or a group of closely related species) and nowhere else – the jellyfish gene that guides the formation of stinging cells, the polar cod gene that prevents the fish from freezing, and the fruit fly gene that helps it to fly. They may even have stimulated the evolution of human brain. They’re innovative and they’re everywhere – orphan genes have been found in all of the genomes examined so far.


But because they have no obvious relatives, they struggle to fit into evolutionary theory. Genes, like all life, must have evolved from somewhere. Most genes are formed from other genes, creating a traceable family history. So how are orphan genes made?

Creationists have cited the apparent incompatibility between orphan genes and evolutionary theory as evidence of intelligent design. It’s not. They’re actually an example of natural selection at its finest.

Photo by John Goode
DNA at the Science Museum
The majority of orphan genes, it now seems, lack obvious parents because they’ve sprung up from junk DNA. The idea, once considered totally implausible, is gathering credence as scientific papers pinpoint the non-coding sequences and processes that have forged these foundlings.

Our cells may be constantly experimenting with new genes all the time – ‘testing’ random stretches of non-coding DNA to see if they can produce anything useful. The cell’s cytoplasm is bustling with well-coordinated activity, so most of the proteins manufactured from these sequences won’t fit in. The wannabe gene won’t be selected for, and reverts to plain old, non-coding DNA. But once in a while, junk DNA throws up something useful. The sequence may then start to pick up useful mutations, and over millions of years of natural selection it becomes shaped it into a fully functional gene.

So spare a thought for the orphan gene. Its parents might not look like much – just a jumble of DNA letters arranged in a long string. But orphan genes are masters of innovation. And their success today, means are likely to go on and have families of their own. A happy ending for the orphan gene. 

Would you like to find out more? 

Have a look at the article I wrote for New Scientist:
 Genes from nowhere - Orphans with a surprising story

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